Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF639

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

sample type
cell line
cell line
HepG2
sex
male
health state
hepatocellular carcinoma
dev_stage
child
age
15 year
donor ID
ENCDO000AAC
lab
Richard Myers, HAIB

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
63100604
Reads aligned (%)
90.8
Duplicates removed (%)
9.3
Number of peaks
8739 (qval < 1E-05)

hg19

Number of total reads
63100604
Reads aligned (%)
90.3
Duplicates removed (%)
10.4
Number of peaks
8377 (qval < 1E-05)

Base call quality data from DBCLS SRA